ColabFold ↗
Run protein structure prediction through notebooks or local batch tools, connecting sequence search with modeling.
Source · ColabFold projectView resource details →04 / TOOLS & METHODS
Tools & workflows
Discover analysis tools and reproducible workflows, from choosing a resource to putting it to work.
Start with these resources
Filter this topic →Scanpy ↗
Analyze single-cell data in Python, from preprocessing and visualization to clustering and differential expression.
Source · scverse · Scanpy projectView resource details →Bioconductor ↗
An R-centered ecosystem of analysis packages, annotations and reproducible workflows for biological data.
Source · Bioconductor projectView resource details →Virtual Cells Platform ↗
Explore biological datasets, AI models and task benchmarks through a shared platform for model use and evaluation.
Source · Biohub · Virtual Cells PlatformView resource details →scGPT ↗
Use pretrained models for single-cell analysis, including cell representations, annotation and perturbation prediction.
Source · Wang Lab · scGPT projectView resource details →Pertpy ↗
Analyze single-cell perturbation experiments, organize data and metadata, and compare cellular responses to perturbations.
Source · scverse · Pertpy projectView resource details →nf-core ↗
Community-maintained Nextflow pipelines and components for portable, reproducible bioinformatics analysis.
Source · nf-core communityView resource details →Galaxy ↗
Build analyses in a web interface, keep a record of each step and share data, results and workflows.
Source · Galaxy communityView resource details →Related reading
No articles have been published in this topic yet. Reviewed reading will be added here.