Database
UniProt
Find protein sequences, functional annotations and identifier mappings, with links to related biological data.
Source · UniProt ConsortiumChecked
DISCOVER / 02
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Bioinformatics databases, tools, and workflows selected from official sources. Explore by topic and save useful starting points.
13 resources
Database
RCSB PDB
Search, view and download macromolecular structures alongside their experimental context.
Source · RCSB PDBChecked
Database
AlphaFold DB
Explore predicted protein structures and confidence information, with downloadable models for further study.
Source · Google DeepMind · EMBL-EBIChecked
Tool
ColabFold
Run protein structure prediction through notebooks or local batch tools, connecting sequence search with modeling.
Source · ColabFold projectChecked
Tool
Scanpy
Analyze single-cell data in Python, from preprocessing and visualization to clustering and differential expression.
Source · scverse · Scanpy projectChecked
Platform
Bioconductor
An R-centered ecosystem of analysis packages, annotations and reproducible workflows for biological data.
Source · Bioconductor projectChecked
Database
Ensembl
Explore genomes, gene annotations, variation and comparative genomics in a shared browsing environment.
Source · EMBL-EBI · Ensembl projectChecked
Database
CZ CELLxGENE Census
A public single-cell RNA data resource. Query cells and genes, then bring selected data into Python or R.
Source · CZ CELLxGENE projectChecked
Platform
Virtual Cells Platform
Explore biological datasets, AI models and task benchmarks through a shared platform for model use and evaluation.
Source · Biohub · Virtual Cells PlatformChecked
Tool
scGPT
Use pretrained models for single-cell analysis, including cell representations, annotation and perturbation prediction.
Source · Wang Lab · scGPT projectChecked
Tool
Pertpy
Analyze single-cell perturbation experiments, organize data and metadata, and compare cellular responses to perturbations.
Source · scverse · Pertpy projectChecked
Workflow
nf-core
Community-maintained Nextflow pipelines and components for portable, reproducible bioinformatics analysis.
Source · nf-core communityChecked
Platform
Galaxy
Build analyses in a web interface, keep a record of each step and share data, results and workflows.
Source · Galaxy communityChecked
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