05 / STRUCTURE · MOTION · INTERACTIONS
Are we looking at one structure, or conformational evidence that supports the research question?
Structures provide spatial clues; conformational changes raise further questions. Connect structural data, prediction, docking, and dynamics while considering how each model represents molecular states.
Start exploring01 / GET YOUR BEARINGS
Follow the questions in order, or go straight to the part that matters to your work.
Expand each stage to explore ↗Distinguish experimental from predicted structures and retain experimental conditions, model versions, and quality information.
Check input composition, structural coverage, and confidence before deciding whether a prediction suits the task.
When reading docking or conformational analyses, inspect restraints, sampling, and controls alongside the final visualization.
Distinguish generated candidate conformations, simulation observations, and experimental support. Visualization alone is not validation.
02 / READING
A version-pinned guide to AlphaFold 3 on Linux GPUs, CPUs, and Apple Silicon, including installation, storage requirements, experimental backends, and limitations.
Read the article → 11 min · Chinese bodyBioEmu2 combines structure prediction, equilibrium sampling and time propagation. Official demonstrations and author responses explain its potential, while binding rates, membrane-protein dynamics and hardware performance still require validation.
HADDOCK3 2026.10.1 fixes a silent failure in contactairs. This guide explains the selection-expression and byres changes, added tests, and which refinement or scoring jobs merit review.
03 / RESOURCES
Search, view and download macromolecular structures alongside their experimental context.
Details →Explore predicted protein structures and confidence information, with downloadable models for further study.
Details →Run protein structure prediction through notebooks or local batch tools, connecting sequence search with modeling.
Details →